Updated: July 18, 2025

Using manure as fertilizer is a time-honored practice that enriches soil with essential nutrients, improves soil structure, and promotes healthy plant growth. Farmers, gardeners, and landscapers alike have long relied on manure to boost crop yields and maintain sustainable soil health. However, despite its benefits, improper use of manure can lead to nutrient imbalances, environmental pollution, and even damage to plants.

This article explores the most common mistakes made when using manure as fertilizer and offers practical advice on how to avoid them to maximize benefits while minimizing risks.

Understanding the Benefits of Manure

Before diving into common mistakes, it’s important to understand why manure is such a valuable fertilizer:

  • Nutrient-rich: Manure supplies nitrogen (N), phosphorus (P), potassium (K), and trace elements essential for plant growth.
  • Improves soil structure: Organic matter from manure enhances soil aeration, moisture retention, and microbial activity.
  • Sustainable recycling: Using manure recycles animal waste and reduces dependence on synthetic fertilizers.
  • Cost-effective: For many farmers and gardeners, manure is an affordable nutrient source compared to commercial fertilizers.

Despite these advantages, manure must be handled carefully to avoid pitfalls.

Common Mistakes When Using Manure as Fertilizer

1. Applying Fresh Manure Directly to Crops

One of the most frequent errors is applying raw or fresh manure directly onto crops or planting beds without proper composting.

Why it’s a problem:

  • Fresh manure contains high levels of ammonia and pathogens such as E. coli, Salmonella, or parasites that can contaminate food crops.
  • Ammonia in fresh manure can “burn” plants by damaging roots or foliage.
  • High moisture content in fresh manure can lead to nitrogen being lost through volatilization before it reaches the plants.

How to avoid it:

  • Compost manure thoroughly before application. Composting at adequate temperatures (130–160°F or 55–70°C) for several weeks kills pathogens and stabilizes nutrients.
  • If composting is not possible, apply fresh manure well in advance of planting (preferably in the fall) to allow time for nutrient stabilization and pathogen die-off.
  • Avoid applying fresh manure directly to vegetable gardens or edible crops.

2. Overapplication Leading to Nutrient Overload

More manure doesn’t always mean better results. Overapplying manure can create nutrient imbalances that harm plants and pollute the environment.

Why it’s a problem:

  • Excess nitrogen can cause lush vegetative growth but poor fruit or grain production.
  • Surplus phosphorus can accumulate in soil and runoff into waterways, causing eutrophication (algal blooms) that damage aquatic ecosystems.
  • Nutrient overload may cause salt buildup in soil, impairing plant water uptake.

How to avoid it:

  • Conduct a soil test before application to determine existing nutrient levels and manure needs.
  • Calculate application rates based on crop nutrient requirements and nutrient content of the manure.
  • Follow recommended guidelines for maximum nutrient loading per acre or garden bed.
  • Rotate manure application areas over time to prevent nutrient buildup in one location.

3. Neglecting Manure Analysis

Not all manures are created equal — nutrient content varies widely depending on animal type, diet, bedding material, storage method, and age.

Why it’s a problem:

  • Without knowing the actual nutrient content of your manure, you risk under- or over-applying nutrients.
  • For example, poultry manure tends to be higher in nitrogen compared to cow or horse manure.
  • Bedding materials like straw dilute nutrient concentration but add organic matter.

How to avoid it:

  • Get your manure tested periodically through agricultural extension services or commercial laboratories.
  • Use the results to tailor application rates specifically for your crop needs.
  • Regular testing helps monitor changes over time and improve fertilizer management decisions.

4. Applying Manure at the Wrong Time

Timing matters greatly when applying manure for fertility benefits.

Why it’s a problem:

  • Applying just before heavy rain can wash nutrients away before plants absorb them.
  • Applying too close to planting time may expose seeds or seedlings to ammonia toxicity from decomposing manure.
  • Applying after crop uptake periods wastes nutrients that leach beyond root zones.

How to avoid it:

  • Apply manure during fall or early spring so nutrients can integrate into soil before planting season.
  • Avoid applications during wet weather forecasts.
  • Incorporate manure into the soil promptly after spreading rather than leaving it on the surface exposed.

5. Failing to Properly Incorporate Manure into Soil

Leaving manure on the soil surface without mixing it in reduces its effectiveness and increases pollution risks.

Why it’s a problem:

  • Surface-applied manure is susceptible to nitrogen loss through volatilization as ammonia gas escapes into the air.
  • Runoff during rain events can carry nutrients into streams and rivers causing environmental contamination.

How to avoid it:

  • Till or rake manure into the top 4–6 inches of soil soon after application.
  • Incorporation minimizes nitrogen loss, improves nutrient availability for plants, and reduces odor problems.

6. Ignoring Patience for Decomposition

Expecting immediate plant growth benefits after applying manure is unrealistic because nutrients release gradually as organic matter decomposes.

Why it’s a problem:

  • Plants may suffer from initial nitrogen immobilization where microbes use available nitrogen to break down carbon-rich material, temporarily reducing nitrogen availability for crops.

How to avoid it:

  • Plan applications well ahead of planting so microbial decomposition processes stabilize nutrient availability by growing season.
  • Use composted rather than raw materials when rapid nutrient release is desired.

7. Not Considering Crop Sensitivities

Different crops have varying tolerance levels and nutritional needs related to manure application.

Why it’s a problem:

  • Leafy greens are more sensitive to high nitrogen levels causing excessive foliage but poor taste or bolting.
  • Root crops might develop scabby blemishes if subjected to too much fresh poultry litter.

How to avoid it:

  • Adjust rates according to crop type recommendations from agricultural guides or extension services.

8. Neglecting Environmental Regulations

In many regions, there are regulations governing how much and when you can apply animal manures due to their pollution potential.

Why it’s a problem:

  • Ignoring local laws risks fines or legal action.
  • Improper application near water sources threatens drinking water quality through nitrate contamination.

How to avoid it:

  • Familiarize yourself with local agricultural guidelines regarding livestock waste use.
  • Implement buffer zones near streams or wells where no application occurs.

Best Practices Summary for Safe and Effective Manure Use

  1. Compost Manure Properly: Kill pathogens and stabilize nutrients before use.
  2. Test Manure Nutrient Content: Tailor application rates accurately.
  3. Conduct Soil Tests: Understand existing fertility status for balanced application.
  4. Follow Recommended Application Rates: Prevent overloads harmful to plants and environment.
  5. Apply at Optimal Times: Preferably fall or early spring; avoid wet conditions.
  6. Incorporate Into Soil Quickly: Minimize losses and runoff risks.
  7. Adjust Rates by Crop Type: Match nutrition needs without stressing plants.
  8. Respect Environmental Regulations: Protect water sources; comply with laws.

Conclusion

Manure remains an invaluable resource for sustainable agriculture when used correctly. Avoiding common mistakes such as applying fresh raw material directly, ignoring timing and incorporation protocols, neglecting nutrient testing, or overloading soils ensures that your fertile grounds remain productive year after year without harming the environment.

By adopting best management practices informed by science and local regulations, farmers and gardeners can harness the full potential of this natural fertilizer — supporting healthy crops while safeguarding our soils and waterways for future generations.

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